rstan/brms导致R和RStudio会话中止。

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英文:

rstan/brms cause R and RStudio session abort

问题

我遇到了与https://stackoverflow.com/questions/72168874/rstan-and-brms-cause-r-and-rstudio-session-abort/76575711#76575711非常相似的问题。每当开始抽样时，R会崩溃（R会话中止）。

我已经尝试重新安装rstan以及建议的依赖项，但没有起作用。

你是否有任何建议？

  • 更新 1
英文:

I am experiencing a very similar issue as https://stackoverflow.com/questions/72168874/rstan-and-brms-cause-r-and-rstudio-session-abort/76575711#76575711. Whenever it starts sampling, R crashes (R session abort).

I have tried reinstalling rstan along the suggested dependencies, but it has not worked.

Would you happen to have any suggestions?

  • update 1
  1. ─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
  2.  setting  value
  3.  version  R version 4.3.1 (2023-06-16)
  4.  os       macOS Ventura 13.4.1
  5.  system   x86_64, darwin20
  6.  ui       RStudio
  7.  language (EN)
  8.  collate  en_US.UTF-8
  9.  ctype    en_US.UTF-8
  10.  tz       Europe/London
  11.  date     2023-06-28
  12.  rstudio  2023.03.0+386 Cherry Blossom (desktop)
  13.  pandoc   2.11 @ /Users/edoardogiuseppeostinelli/opt/anaconda3/bin/pandoc
  15. ─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
  16.  package     * version date (UTC) lib source
  17.  cachem        1.0.8   2023-05-01 [1] CRAN (R 4.3.0)
  18.  callr         3.7.3   2022-11-02 [1] CRAN (R 4.3.0)
  19.  cli           3.6.1   2023-03-23 [1] CRAN (R 4.3.0)
  20.  crayon        1.5.2   2022-09-29 [1] CRAN (R 4.3.0)
  21.  devtools      2.4.5   2022-10-11 [1] CRAN (R 4.3.0)
  22.  digest        0.6.32  2023-06-26 [1] CRAN (R 4.3.0)
  23.  ellipsis      0.3.2   2021-04-29 [1] CRAN (R 4.3.0)
  24.  fastmap       1.1.1   2023-02-24 [1] CRAN (R 4.3.0)
  25.  fs            1.6.2   2023-04-25 [1] CRAN (R 4.3.0)
  26.  glue          1.6.2   2022-02-24 [1] CRAN (R 4.3.0)
  27.  htmltools     0.5.5   2023-03-23 [1] CRAN (R 4.3.0)
  28.  htmlwidgets   1.6.2   2023-03-17 [1] CRAN (R 4.3.0)
  29.  httpuv        1.6.11  2023-05-11 [1] CRAN (R 4.3.0)
  30.  later         1.3.1   2023-05-02 [1] CRAN (R 4.3.0)
  31.  lifecycle     1.0.3   2022-10-07 [1] CRAN (R 4.3.0)
  32.  magrittr      2.0.3   2022-03-30 [1] CRAN (R 4.3.0)
  33.  memoise       2.0.1   2021-11-26 [1] CRAN (R 4.3.0)
  34.  mime          0.12    2021-09-28 [1] CRAN (R 4.3.0)
  35.  miniUI        0.1.1.1 2018-05-18 [1] CRAN (R 4.3.0)
  36.  pkgbuild      1.4.2   2023-06-26 [1] CRAN (R 4.3.0)
  37.  pkgload       1.3.2   2022-11-16 [1] CRAN (R 4.3.0)
  38.  prettyunits   1.1.1   2020-01-24 [1] CRAN (R 4.3.0)
  39.  processx      3.8.1   2023-04-18 [1] CRAN (R 4.3.0)
  40.  profvis       0.3.8   2023-05-02 [1] CRAN (R 4.3.0)
  41.  promises      1.2.0.1 2021-02-11 [1] CRAN (R 4.3.0)
  42.  ps            1.7.5   2023-04-18 [1] CRAN (R 4.3.0)
  43.  purrr         1.0.1   2023-01-10 [1] CRAN (R 4.3.0)
  44.  R6            2.5.1   2021-08-19 [1] CRAN (R 4.3.0)
  45.  Rcpp          1.0.10  2023-01-22 [1] CRAN (R 4.3.0)
  46.  remotes       2.4.2   2021-11-30 [1] CRAN (R 4.3.0)
  47.  rlang         1.1.1   2023-04-28 [1] CRAN (R 4.3.0)
  48.  rstudioapi    0.14    2022-08-22 [1] CRAN (R 4.3.0)
  49.  sessioninfo   1.2.2   2021-12-06 [1] CRAN (R 4.3.0)
  50.  shiny         1.7.4   2022-12-15 [1] CRAN (R 4.3.0)
  51.  stringi       1.7.12  2023-01-11 [1] CRAN (R 4.3.0)
  52.  stringr       1.5.0   2022-12-02 [1] CRAN (R 4.3.0)
  53.  urlchecker    1.0.1   2021-11-30 [1] CRAN (R 4.3.0)
  54.  usethis       2.2.1   2023-06-23 [1] CRAN (R 4.3.0)
  55.  vctrs         0.6.3   2023-06-14 [1] CRAN (R 4.3.0)
  56.  xtable        1.8-4   2019-04-21 [1] CRAN (R 4.3.0)
  58.  [1] /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library

答案1

得分: 1

尝试使用cmdstanr后端

backend: 字符串，用于指定用于拟合Stan模型的后端包名称。选项为‘"rstan"’（默认值）或‘"cmdstanr"’。可以通过当前R会话的‘"brms.backend"’选项（请参阅‘options’）在全局范围内进行设置。有关‘rstan’和‘cmdstanr’包的详细信息分别可在<https://mc-stan.org/rstan/>和<https://mc-stan.org/cmdstanr/>找到。

我还在这里提供了一些设置说明。

英文:

Try using the cmdstanr backend

> backend: Character string naming the package to use as the backend for
fitting the Stan model. Options are ‘"rstan"’ (the default)
or ‘"cmdstanr"’. Can be set globally for the current R
session via the ‘"brms.backend"’ option (see ‘options’).
Details on the ‘rstan’ and ‘cmdstanr’ packages are available
at <https://mc-stan.org/rstan/> and
<https://mc-stan.org/cmdstanr/>, respectively.

I also have some setup instructions here.

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  • 本文由 发表于 2023年6月29日 04:03:01
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  • brms
  • r
  • rstan
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