英文:
how to install igblast in conda environment
问题
我在conda中安装igblast时遇到问题，
我尝试了anaconda/bioconda中的命令
conda install -c bioconda igblast
在运行igblastn时出错
error while loading shared libraries: libncbi-vdb.so.2: cannot open shared object file: No such file or directory
第二个
conda install -c "bioconda/label/cf201901" igblast
安装了一个非常旧的版本，产生了错误的结果
igblastn -version
igblastn: 1.0.0
Package: igblast 1.10.0, build Sep 4 2018 11:24:17
尝试更新没有任何作用，conda报告一切正常！有什么建议吗？我试图避免手动安装。
PS：由于声望不足，无法将igblast添加为标签
英文:
I'm facing problem installing igblast in conda,
I have tried the commands as in anaconda/bioconda
conda install -c bioconda igblast
that throws an error when running igblastn
error while loading shared libraries: libncbi-vdb.so.2: cannot open shared object file: No such file or directory
while the second
conda install -c "bioconda/label/cf201901" igblast
installed a VERY old version that produced incorrect results
igblastn -version
igblastn: 1.0.0
Package: igblast 1.10.0, build Sep 4 2018 11:24:17
trying to update did nothing as conda reports all is good! Any idea what to do? I'm trying to avoid manual installation.
PS: couldn't add igblast as a tag to the question due to not having enough reputation
答案1
得分: 0
Bioconda需要Conda Forge频道才能正常运行，因为在构建Bioconda上的软件包时使用了这个频道。尝试
conda install -c conda-forge -c bioconda igblast
请注意，我强烈建议不要在Anaconda的base环境中安装Bioconda和Conda Forge软件包。相反，请创建一个新的环境。在这种情况下是否适用不太清楚。
英文:
Bioconda requires the Conda Forge channel to function correctly since that is what is used when packages on Bioconda are built. Try
conda install -c conda-forge -c bioconda igblast
Note that I would strongly advise against installing Bioconda and Conda Forge packages in an Anaconda base environment. Instead, create a new environment. Not clear if that applies in this situation.
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