计算两个或更多时间点的分数变化

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英文:

Calculating score change at two or more time point

问题

我有一个非常简单的问题:想象一下一个认知测试,其中有6个项目,每个项目都在0-10分的标度上分别评分。

现在假设有5名患者在一天中的三个(或更多)不同时间进行了这个测试。

df <- tibble(
  id = rep(1:5, each = 3),
  time = rep(c("morning", "evening", "night"), each = 1, times = 5),
  i1 = round(runif(15, 0, 10)),
  i2 = round(runif(15, 0, 10)),
  i3 = round(runif(15, 0, 10)),
  i4 = round(runif(15, 0, 10)),
  i5 = round(runif(15, 0, 10)),
  i6 = round(runif(15, 0, 10))
)

现在,我该如何计算每个患者在不同时间段内每个个别项目得分的变化?欢迎使用tidyverse方法。

P.S:输出最好是这样的:

df <- tibble(
  id = rep(1:5, each = 3),
  time = rep(c("morning", "evening", "night"), each = 1, times = 5),
  i1 = round(runif(15, 0, 10)),
  i2 = round(runif(15, 0, 10)),
  i3 = round(runif(15, 0, 10)),
  i4 = round(runif(15, 0, 10)),
  i5 = round(runif(15, 0, 10)),
  i6 = round(runif(15, 0, 10)),
  diff_morning_evening = rep(NA, 15),
  diff_morning_night = rep(NA, 15),
  diff_evening_night = rep(NA, 15),
)
英文:

I have a very simple question: Imagine a cognitive test with 6 items, each of which is scored separately on a 0-10 scale
now let's say 5 patients have taken this test at three (or more) different time of the day.

df &lt;- tibble(
  id = rep(1:5, each = 3),
  time = rep(c(&quot;morning&quot;, &quot;evening&quot;, &quot;night&quot;), each = 1, times = 5),
  i1 = round(runif(15, 0, 10)),
  i2 = round(runif(15, 0, 10)),
  i3 = round(runif(15, 0, 10)),
  i4 = round(runif(15, 0, 10)),
  i5 = round(runif(15, 0, 10)),
  i6 = round(runif(15, 0, 10))
)

Now, how can I calculate the changes in the score of each individual item for every patient between different times of the day?
tidyverse approaches are highly appreciated.

P.S: the output should be preferably something like this:

df &lt;- tibble(
  id = rep(1:5, each = 3),
  time = rep(c(&quot;morning&quot;, &quot;evening&quot;, &quot;night&quot;), each = 1, times = 5),
  i1 = round(runif(15, 0, 10)),
  i2 = round(runif(15, 0, 10)),
  i3 = round(runif(15, 0, 10)),
  i4 = round(runif(15, 0, 10)),
  i5 = round(runif(15, 0, 10)),
  i6 = round(runif(15, 0, 10)),
  diff_morning_evening = rep(NA, 15),
  diff_morning_night = rep(NA, 15),
  diff_evening_night = rep(NA, 15),
)

答案1

得分: 3

以下是翻译好的内容:

计算变化的方法:

  • 第1行:早上 - 晚上
  • 第2行:早上 - 傍晚
  • 第3行:傍晚 - 晚上
df %>%
  group_by(id) %>%
  mutate(across(i1:i6, ~ ifelse(is.na(.x - lag(.x)), 
                           lead(.x, 2) - .x, .x - lag(.x)), 
           .names="\\{.col}_chg")) %>%
  ungroup()
# 一个 tibble: 15 × 14
      id time       i1    i2    i3    i4    i5    i6 i1_chg i2_chg i3_chg i4_chg
   <int> <chr>   <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>  <dbl>  <dbl>  <dbl>  <dbl>
 1     1 早上     1     2     4     9     5     6      7     -1      1     -8
 2     1 傍晚     5     0     4     8     9     4      4     -2      0     -1
 3     1 晚上     8     1     5     1     4     5      3      1      1     -7
 4     2 早上     7     7     4     3     2     9     -5     -1      4      5
 5     2 傍晚     8     9     1     2     4     5      1      2     -3     -1
 6     2 晚上     2     6     8     8    10     2     -6     -3      7      6
 7     3 早上     9     6     6     1     5     5     -8     -1      2      0
 8     3 傍晚     3     2     8     1     3    10     -6     -4      2      0
 9     3 晚上     1     5     8     1     3     3     -2      3      0      0
10     4 早上     7     2     9     1     5     8      1      1     -6      0
11     4 傍晚     3     5     9     5     6     3     -4      3      0      4
12     4 晚上     8     3     3     1     3     2      5     -2     -6     -4
13     5 早上     4     1     3     7     1     0      4      6      4      2
14     5 傍晚     7     2     7     7     5     2      3      1      4      0
15     5 晚上     8     7     7     9     8     4      1      5      0      2
# … 还有 2 个变量:i5_chg 和 i6_chg

特殊行求和方法:

df %>%
  group_by(id) %>%
  summarize(across(i1:i6, ~ 
    .x[which(time == "早上")] + .x[which(time == "晚上")]))
# 一个 tibble: 5 × 7
     id    i1    i2    i3    i4    i5    i6
  <int> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1     1     9     3     9    10     9    11
2     2     9    13    12    11    12    11
3     3    10    11    14     2     8     8
4     4    15     5    12     2     8    10
5     5    12     8    10    16     9     4

注意:代码部分未进行翻译,仅提供了翻译好的内容。

英文:

An approach calculating the changes in a compact way:

  • 1st row: morning - night
  • 2nd row: morning - evening
  • 3rd row: evening - night
df %&gt;% 
group_by(id) %&gt;% 
mutate(across(i1:i6, ~ ifelse(is.na(.x - lag(.x)), 
lead(.x, 2) - .x, .x - lag(.x)), 
.names=&quot;{.col}_chg&quot;)) %&gt;% 
ungroup()
# A tibble: 15 &#215; 14
id time       i1    i2    i3    i4    i5    i6 i1_chg i2_chg i3_chg i4_chg
&lt;int&gt; &lt;chr&gt;   &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt;  &lt;dbl&gt;  &lt;dbl&gt;  &lt;dbl&gt;  &lt;dbl&gt;
1     1 morning     1     2     4     9     5     6      7     -1      1     -8
2     1 evening     5     0     4     8     9     4      4     -2      0     -1
3     1 night       8     1     5     1     4     5      3      1      1     -7
4     2 morning     7     7     4     3     2     9     -5     -1      4      5
5     2 evening     8     9     1     2     4     5      1      2     -3     -1
6     2 night       2     6     8     8    10     2     -6     -3      7      6
7     3 morning     9     6     6     1     5     5     -8     -1      2      0
8     3 evening     3     2     8     1     3    10     -6     -4      2      0
9     3 night       1     5     8     1     3     3     -2      3      0      0
10     4 morning     7     2     9     1     5     8      1      1     -6      0
11     4 evening     3     5     9     5     6     3     -4      3      0      4
12     4 night       8     3     3     1     3     2      5     -2     -6     -4
13     5 morning     4     1     3     7     1     0      4      6      4      2
14     5 evening     7     2     7     7     5     2      3      1      4      0
15     5 night       8     7     7     9     8     4      1      5      0      2
# … with 2 more variables: i5_chg &lt;dbl&gt;, i6_chg &lt;dbl&gt;

Summing special rows approach

df %&gt;% 
group_by(id) %&gt;% 
summarize(across(i1:i6, ~ 
.x[which(time == &quot;morning&quot;)] + .x[which(time == &quot;night&quot;)]))
# A tibble: 5 &#215; 7
id    i1    i2    i3    i4    i5    i6
&lt;int&gt; &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt; &lt;dbl&gt;
1     1     9     3     9    10     9    11
2     2     9    13    12    11    12    11
3     3    10    11    14     2     8     8
4     4    15     5    12     2     8    10
5     5    12     8    10    16     9     4

答案2

得分: 3

你可以使用combn生成所有的两两组合,并对每个组合应用diff函数来计算更改,设置FUN = diff

library(tidyverse)

df %>%
  group_by(id) %>%
  summarise(DIFF = combn(time, 2, paste, collapse = '_'),
            across(i1:i6, ~ combn(.x, 2, diff)), .groups = 'drop')

# # A tibble: 15 × 8
#      id DIFF                   i1        i2        i3        i4        i5        i6
#    <int> <chr[1d]>       <dbl[1d]> <dbl[1d]> <dbl[1d]> <dbl[1d]> <dbl[1d]> <dbl[1d]>
#  1     1 morning_evening         1        -2         0         5         1         3
#  2     1 morning_night          -2         5         1         3        -2        -1
#  3     1 evening_night          -3         7         1        -2        -3        -4
#  4     2 morning_evening         1         5        -2        -3         5         7
#  5     2 morning_night           2        -1         6         2        -2         1
#  6     2 evening_night           1        -6         8         5        -7        -6
# ...

如果你想要宽格式的输出,请将上述代码传递给tidyr::pivot_wider()

... %>%
  pivot_wider(names_from = DIFF, values_from = i1:i6, names_prefix = 'diff_')

# # A tibble: 5 × 19
#      id i1_diff_morning_evening i1_diff_morning_night i1_diff_evening_night i2_diff_morning_evening i2_diff_morning_night i2_diff_evening_night
#   <int>                   <dbl>                 <dbl>                 <dbl>                   <dbl>                 <dbl>                 <dbl>
# 1     1                       1                    -2                    -3                      -2                     5                     7
# 2     2                       1                     2                     1                       5                    -1                    -6
# 3     3                       2                    -1                    -3                       5                    -1                    -6
# 4     4                       1                     2                     1                      -2                    -4                    -2
# 5     5                       6                     7                     1                       1                     0                    -1
#
# … with 12 more variables:
# i3_diff_morning_evening <dbl>, i3_diff_morning_night <dbl>, i3_diff_evening_night <dbl>,
# i4_diff_morning_evening <dbl>, i4_diff_morning_night <dbl>, i4_diff_evening_night <dbl>,
# i5_diff_morning_evening <dbl>, i5_diff_morning_night <dbl>, i5_diff_evening_night <dbl>,
# i6_diff_morning_evening <dbl>, i6_diff_morning_night <dbl>, i6_diff_evening_night <dbl>
英文:

You can use combn to generate all combinations of 2 times, and apply diff to each combination to calculate the change by setting FUN = diff.

library(tidyverse)

df %&gt;% 
  group_by(id) %&gt;% 
  summarise(DIFF = combn(time, 2, paste, collapse = &#39;_&#39;),
            across(i1:i6, ~ combn(.x, 2, diff)), .groups = &#39;drop&#39;)

# # A tibble: 15 &#215; 8
#       id DIFF                   i1        i2        i3        i4        i5        i6
#    &lt;int&gt; &lt;chr[1d]&gt;       &lt;dbl[1d]&gt; &lt;dbl[1d]&gt; &lt;dbl[1d]&gt; &lt;dbl[1d]&gt; &lt;dbl[1d]&gt; &lt;dbl[1d]&gt;
#  1     1 morning_evening         1        -2         0         5         1         3
#  2     1 morning_night          -2         5         1         3        -2        -1
#  3     1 evening_night          -3         7         1        -2        -3        -4
#  4     2 morning_evening         1         5        -2        -3         5         7
#  5     2 morning_night           2        -1         6         2        -2         1
#  6     2 evening_night           1        -6         8         5        -7        -6
# ...

If you want a wide-format output, pass the above code to tidyr::pivot_wider():

... %&gt;%
  pivot_wider(names_from = DIFF, values_from = i1:i6, names_prefix = &#39;diff_&#39;)

# # A tibble: 5 &#215; 19
#      id i1_diff_morning_evening i1_diff_morning_night i1_diff_evening_night i2_diff_morning_evening i2_diff_morning_night i2_diff_evening_night
#   &lt;int&gt;                   &lt;dbl&gt;                 &lt;dbl&gt;                 &lt;dbl&gt;                   &lt;dbl&gt;                 &lt;dbl&gt;                 &lt;dbl&gt;
# 1     1                       1                    -2                    -3                      -2                     5                     7
# 2     2                       1                     2                     1                       5                    -1                    -6
# 3     3                       2                    -1                    -3                       5                    -1                    -6
# 4     4                       1                     2                     1                      -2                    -4                    -2
# 5     5                       6                     7                     1                       1                     0                    -1
#
# … with 12 more variables:
# i3_diff_morning_evening &lt;dbl&gt;, i3_diff_morning_night &lt;dbl&gt;, i3_diff_evening_night &lt;dbl&gt;,
# i4_diff_morning_evening &lt;dbl&gt;, i4_diff_morning_night &lt;dbl&gt;, i4_diff_evening_night &lt;dbl&gt;,
# i5_diff_morning_evening &lt;dbl&gt;, i5_diff_morning_night &lt;dbl&gt;, i5_diff_evening_night &lt;dbl&gt;,
# i6_diff_morning_evening &lt;dbl&gt;, i6_diff_morning_night &lt;dbl&gt;, i6_diff_evening_night &lt;dbl&gt;

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  • 本文由 发表于 2023年1月8日 22:38:57
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