I cannot read external files from the application image created using the Java JLink tool

I cannot read external files from the application image that I created using JLink tool(mvn javaf:jlink) when the application is running. The external files are placed in the resources folder. This is the error that I got:

ERROR ExecutorOfFiles Script failed to read or load: SampleScript.jsh
java.nio.file.NoSuchFileException: /com.luisosv/com/luisosv/SampleScript.jsh
        at java.base/jdk.internal.jrtfs.JrtFileSystem.checkNode(JrtFileSystem.java:494)
        at java.base/jdk.internal.jrtfs.JrtFileSystem.getFileContent(JrtFileSystem.java:253)
        at java.base/jdk.internal.jrtfs.JrtFileSystem.newByteChannel(JrtFileSystem.java:351)
        at java.base/jdk.internal.jrtfs.JrtPath.newByteChannel(JrtPath.java:696)
        at java.base/jdk.internal.jrtfs.JrtFileSystemProvider.newByteChannel(JrtFileSystemProvider.java:302)
        at java.base/java.nio.file.Files.newByteChannel(Files.java:370)
        at java.base/java.nio.file.Files.newByteChannel(Files.java:421)
        at java.base/java.nio.file.Files.readAllBytes(Files.java:3205)
        at com.luisosv@1.0-SNAPSHOT/com.luisosv.ExecutorOfFiles.loadSnippetsFromFile(ExecutorOfFiles.java:55)

I'm using the following to read the external file:

String sourceCode = new String(Files.readAllBytes(
                Paths.get(
                        this.getClass().getResource(scriptFileName).toURI())));

However, using the application from command-line it works fine mvn javafx:run.

I've read that the application image once created, cannot be updated or patched. For any changes, a new application needs to be deployed from https://www.studytrails.com/java/java-9/java-9-jlink/, and I don't know if that is the reason or something else.

Thanks in advance.

There is a bug in the resource lookup for the jrt filesystem affecting Java versions prior to 13.

When I run the following code snippet:

Path p = Paths.get(Object.class.getResource("Object.class").toURI());
System.out.println(p);
System.out.println(Files.exists(p));

All JDKs from 9 to 12 produce the following output:

/java.base/java/lang/Object.class
false

Starting with JDK 13, the output is

/modules/java.base/java/lang/Object.class
true

Likewise, Files.readAllBytes(Paths.get(Object.class.getResource("Object.class").toURI())) produces the exception java.nio.file.NoSuchFileException: /java.base/java/lang/Object.class similar to the exception in your question, showing a path with a module name but no preceding /modules, for JDK 9 to 12.

So, just switching to JDK 13 or newer would solve your problem.

Note, however, that using

byte[] b = Object.class.getResourceAsStream("Object.class").readAllBytes();

or cleaner

try(InputStream is = Object.class.getResourceAsStream("Object.class")) {
    byte[] b = is.readAllBytes();
}

works on all versions from 9 to 14. So I recommend using getResourceAsStream in the first place instead of the URL → URI → Path detour.

That said, you should not use the String(byte[]) constructor. The outcome of this constructor will depend on the current environment, using the system’s default character encoding whereas the actual encoding of your embedded resource will never change.

Use, e.g. new String(b, StandardCharsets.UTF_8), or specify whatever your resource is encoded with.

Loading a resource as file does not work if the file is packed in a JAR file. Use getResourceAsStream(...) instead:

new String(this.getClass().getResourceAsStream(scriptFileName).readAllBytes());